Output Guidelines

BASys2 produces four different output files that can be downloaded after the genome annotation process is completed.

1. Results Zip File:

The results zip file contains the following files:

1. predicted_phage_regions.json - JSON file containing the predicted phage regions
2. predicted_genes.json - JSON file containing the predicted genes
3. detail.txt - Text file containing the details of the genome annotation
4. summary.txt - Text file containing the summary of the PHASTEST program that runs during annotation

2. Genome map file:

The genome map file is a JSON file that can be uploaded to the BASys2 Visualizer Software and can be downloaded HERE.

3. Genome image file :

The genome image file can be downloaded by clicking the download icon within the genome map viewer. You can download the image as a PNG or SVG file.

4. Gene FASTA file:

The gene FASTA file can be downloaded by clicking the "Download FASTA" button within the genome map viewer. FASTA file contains the nucleotide sequence of the selected gene.